A lot has happened since this last post. My ride quality was still not good even after doing a transfer case drop. Not receiving any guidance I did some reading and went ahead to source in some new Adjustable lower control arms, Adjustable track bar, longer end links... I had Robbie's install them and that's all they did. The ride became worse... I went to many random alignment centers but none knew how to align a lifted JGC.
3-4 months later now, I found Off road center and I told them my worries of not having a smooth ride. I also told them about the axle not being centered and they readily knew it was because of improper fitting length of the trackbar. I left the Jeep with them for a day to fix/replace rear brake pads, rear control arm bushings, and they discovered where the noise was coming from. The front drive shaft was bad and need to be replaced. Now I am riding without one... but at least the noise is gone.... will add a new one in a few weeks.